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| 49 |
| 8 | Energie Cottbus | 34 | +5 | 48 |
| 9 | VfR Aalen | 34 | +1 | 46 |
| 10 | FC St. Pauli | 34 | -3 | 43 |
| 11 | MSV Duisburg | 34 | -12 | 43 |
| 12 | SC Paderborn 07 | 34 | 0 | 42 |
| 13 | FC Ingolstadt 04 | 34 | -7 | 42 |
| 14 | VfL BOCHUM | 34 | -12 | 38 |
| 15 | Erzgebirge AUE | 34 | -7 | 37 |
| 16 | Dynamo Dresden | 34 | -14 | 37 |
| 17 | SV Sandhausen | 34 | -28 | 26 |
| 18 | Jahn Regensburg | 34 | -29 | 19 |
